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The Framework for K-12 Science Education recognizes modeling as an essential practice for building deep understanding of science. Modeling assessments should measure the ability to integrate Disciplinary Core Ideas and Crosscutting Concepts. Machine learning (ML) has been utilized to score and provide feedback on open-ended Learning Progression (LP)-aligned assessments. Analytic rubrics have been shown to be easier to evaluate the validity of ML-based scores. A possible drawback of using analytic rubrics is the potential for oversimplification of integrated ideas. We demonstrate the deconstruction of a 3D holistic rubric for modeling assessments aligned LP for Physical Science. We describe deconstructing this rubric into analytic categories for ML training and to preserve its 3D nature.